Fan Hong
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1. SNIPR

SNIPR is a software to design single nucleotide specific programmable riboregulators that can be applied for precise gene regulation and molecular diagnostics.
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2. CrowderOxDNA  and CrowderDNAViewer
Crowder-oxDNA is a software package to study DNA interactions under crowded environment with molecular dynamics. ​ ​CrowdeDNA Viewer is a web-based software used to visualize oxDNA simulation with crowding particles.
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The crowder viewer is a branch of oxDNA viewer (https://sulcgroup.github.io/oxdna-viewer/), which is a nice software to visualize DNA structures. 

3. RNANet

  • A statistical learning model based on convolutional neural network that predict RNA hybridization energy from sequence
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4. Molecular Programming Compliler

A package to design DNA molecular circuit driven by enzyme.
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